Stem-loop eca-mir-155

Accession

MI0012927

Description

Equus caballus eca-mir-155 precursor miRNA

Literature search

49 open access papers mention eca-mir-155
(172 sentences)

Sequence

466028 reads, 751.0 reads per million, 223 experiments

cugUUAAUGCUAAUCGUGAUAGGGGUuuuuaccucggacugaCUCCUACAUGUUAGCAUUAACAg
(((((((((((((.((((.((((((((....(....)...)))))))))))))))))))))))))

Structure

             U    A        uuua c 
cugUUAAUGCUAA CGUG UAGGGGUu    c u
||||||||||||| |||| ||||||||    |  
gACAAUUACGAUU GUAC AUCCUCag    g c
             -    -        -uca g 

Annotation confidence High

Genome context

26: 23977038-23977102 [+]

Mature eca-miR-155-5p

• Accession: MIMAT0013182
• Description: Equus caballus eca-miR-155-5p mature miRNA
• Sequence: 4 - UUAAUGCUAAUCGUGAUAGGGGU - 26
• Evidence: not_experimental

Mature eca-miR-155-3p

• Accession: MIMAT0051473
• Description: Equus caballus eca-miR-155-3p mature miRNA
• Sequence: 43 - CUCCUACAUGUUAGCAUUAACA - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131