Stem-loop sequence eca-mir-486

Accession

MI0012931 (change log)

Description

Equus caballus miR-486 stem-loop

Gene family

MIPF0000220; mir-486

Literature search

6 open access papers mention eca-mir-486
(19 sentences)

Stem-loop

   gg                      ----   c uu 
5'   auccuguacugagcugccccga    ggc c  c
     ||||||||||||||||||||||    ||| |   
3'   uaggacaugacucgacggggcu    ccg g  a
   --                      cgac   u uc 

Deep sequencing

94188 reads, 6.7e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr27: 3709569-3709634 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000016145 ; ANK1-201; intron 40

Database links

• EntrezGene:MIR486
• miRBase Tracker:MI0012931

Mature sequence eca-miR-486-5p

• Accession: MIMAT0013186
• Sequence: 4 - uccuguacugagcugccccgag - 25
• Deep sequencing: 94177 reads, 1 experiments
• Evidence: not experimental

Mature sequence eca-miR-486-3p

• Accession: MIMAT0013187
• Sequence: 46 - cggggcagcucaguacaggau - 66
• Deep sequencing: 11 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).