Stem-loop eca-mir-194-2

Accession

MI0012937

Description

Equus caballus eca-mir-194-2 precursor miRNA

Gene family

MIPF0000055; mir-194

Literature search

1 open access papers mention eca-mir-194-2
(1 sentences)

Sequence

17 reads, 3 reads per million, 1 experiments

auggggucaucaagUGUAACAGCAACUCCAUGUGGAcuggguaccaauuuccaguggagaugcuguuacuuuugaugguuaccaa
.(((..((((((((.(((((((((.((((((.((((.(((...)))...)))))))))).))))))))).))))))))...))).

Structure

a   -gg        U         A      G    --c   g 
 ugg   ucaucaag GUAACAGCA CUCCAU UGGA   ugg  
 |||   |||||||| ||||||||| |||||| ||||   ||| u
 acc   gguaguuu cauugucgu gaggug accu   acc  
a   auu        u         a      -    uua   a 

Annotation confidence Not enough data

Genome context

chr30: 10337925-10338009 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-194-2

Mature eca-miR-194

• Accession: MIMAT0013050
• Description: Equus caballus eca-miR-194 mature miRNA
• Sequence: 15 - UGUAACAGCAACUCCAUGUGGA - 36
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131