Stem-loop sequence eca-mir-194-2

Accession

MI0012937 (change log)

Description

Equus caballus miR-194-2 stem-loop

Gene family

MIPF0000055; mir-194

Literature search

1 open access papers mention eca-mir-194-2
(1 sentences)

Stem-loop

   a   - gu       u         a      g    --c     
5'  ugg g  caucaag guaacagca cuccau ugga   uggg 
    ||| |  ||||||| ||||||||| |||||| ||||   ||| u
3'  acc u  guaguuu cauugucgu gaggug accu   acca 
   a   a ug       u         a      -    uua     

Deep sequencing

25 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr30: 10337925-10338009 [-]
• Overlapping transcripts:

  antisense

  ENSECAT00000024407 ; IARS2-201; intron 12

Clustered miRNAs

< 10kb from eca-mir-194-2

• eca-mir-194-2: chr30: 10337925-10338009 [-]
• eca-mir-215: chr30: 10337621-10337730 [-]

Database links

• EntrezGene:MIR194-2
• miRBase Tracker:MI0012937

Mature sequence eca-miR-194

• Accession: MIMAT0013050
• Sequence: 15 - uguaacagcaacuccaugugga - 36
• Deep sequencing: 50 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).