Stem-loop eca-mir-215

Accession

MI0012938

Description

Equus caballus eca-mir-215 precursor miRNA

Gene family

MIPF0000063; mir-192

Literature search

1 open access papers mention eca-mir-215
(4 sentences)

Sequence

30 reads, 5 reads per million, 1 experiments

aucauuaagaaaugguauacaggaaaAUGACCUAUGAAUUGACAGACaauaugacuaaguuugucugucauuucuguaggccaauauucuguauaucucugcuacuucaa
.......((....(((((((((((...((.((((((((.((((((((((..(.....)..)))))))))).))).))))).))...)))))))))))....)).......

Structure

aucauua  aaau           aaA  A     -   U          ua g 
       ag    gguauacagga   UG CCUAU GAA UGACAGACaa  u a
       ||    |||||||||||   || ||||| ||| ||||||||||  | c
       uc    cuauaugucuu   ac ggaug cuu acugucuguu  a u
aacuuca  gucu           aua  c     u   u          ug a 

Annotation confidence Not enough data

Genome context

chr30: 10337621-10337730 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-215

Mature eca-miR-215

• Accession: MIMAT0013190
• Description: Equus caballus eca-miR-215 mature miRNA
• Sequence: 27 - AUGACCUAUGAAUUGACAGAC - 47
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131