Stem-loop eca-mir-106a

Accession

MI0012942

Description

Equus caballus eca-mir-106a precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention eca-mir-106a
(1 sentences)

Sequence

631 reads, 96 reads per million, 1 experiments

ccuuggccauguCAAAGUGCUUACAGUGCAGGUAGcuuucugagaucuacugcaaugcaagcacuucuuacauuaccaugg
((.(((..((((..((((((((.((.(((((.(((.(((...))).)))))))).)).))))))))...))))..))).))

Structure

  u   cc    -CA        A  G     G   c   c 
cc ugg  augu   AAGUGCUU CA UGCAG UAG uuu  
|| |||  ||||   |||||||| || ||||| ||| ||| u
gg acc  uaca   uucacgaa gu acguc auc aga  
  u   au    uuc        c  a     -   u   g 

Annotation confidence Not enough data

Genome context

chrX: 106692701-106692781 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-106a

Mature eca-miR-106a

• Accession: MIMAT0013194
• Description: Equus caballus eca-miR-106a mature miRNA
• Sequence: 13 - CAAAGUGCUUACAGUGCAGGUAG - 35
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131