miRBase entry: eca-mir-223

Stem-loop eca-mir-223


Accession
MI0012953
Description
Equus caballus eca-mir-223 precursor miRNA
Gene family
MIPF0000067; mir-223

Literature search
4 open access papers mention eca-mir-223
(8 sentences)

Sequence

87 reads, 13 reads per million, 1 experiments
gcccagccuccugcagugccacgcuccguguauuugacaagcugaguuggacacuccaugugguagagUGUCAGUUUGUCAAAUACCCCAagugcggcacaugc
............((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).)))

Structure
gcccagccuccu   -     a    cc u              gaguug       cau 
            gca gugcc cgcu  g guauuugacaagcu      gacacuc   g
            ||| ||||| ||||  | ||||||||||||||      |||||||   u
            cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
------------   a     c    AC C              ------       aug 


Annotation confidence Not enough data
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Genome context
chrX: 48492588-48492691 [+]

Database links

Mature eca-miR-223

Accession MIMAT0013205
Description Equus caballus eca-miR-223 mature miRNA
Sequence 69 - UGUCAGUUUGUCAAAUACCCCA - 90
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131