Stem-loop eca-mir-362

Accession

MI0012957

Description

Equus caballus eca-mir-362 precursor miRNA

Gene family

MIPF0000209; mir-362

Literature search

1 open access papers mention eca-mir-362
(2 sentences)

Sequence

134 reads, 20 reads per million, 1 experiments

ucucgAAUCCUUGGAACCUAGGUGUGAGUgccauuucagugcAACACACCUAUUCAAGGAUUCAaa
....(((((((((((...((((((((..((((......).))).)))))))))))))))))))...

Structure

ucuc           ACC        AG   - au 
    gAAUCCUUGGA   UAGGUGUG  Ugc c  u
    |||||||||||   ||||||||  ||| |   
    CUUAGGAACUU   AUCCACAC  Acg g  u
-aaA           ---        -A   u ac 

Annotation confidence Not enough data

Genome context

chrX: 40073827-40073892 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from eca-mir-362

Mature eca-miR-362-5p

• Accession: MIMAT0013210
• Description: Equus caballus eca-miR-362-5p mature miRNA
• Sequence: 6 - AAUCCUUGGAACCUAGGUGUGAGU - 29
• Evidence: not_experimental

Mature eca-miR-362-3p

• Accession: MIMAT0013211
• Description: Equus caballus eca-miR-362-3p mature miRNA
• Sequence: 43 - AACACACCUAUUCAAGGAUUCA - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131