miRBase entry: eca-mir-374b

Stem-loop eca-mir-374b


Accession
MI0012960
Description
Equus caballus eca-mir-374b precursor miRNA
Gene family
MIPF0000288; mir-374

Literature search
3 open access papers mention eca-mir-374b
(12 sentences)

Sequence

60 reads, 9 reads per million, 1 experiments
acucggauggAUAUAAUACAACCUGCUAAGUGuccuagcacuuaucagguuguauuaucauuguccgugucu
((.(((((((..(((((((((((((.(((((((....))))))).)))))))))))))..))))))).))..

Structure
--  u       AU             C       c 
  ac cggaugg  AUAAUACAACCUG UAAGUGu c
  || |||||||  ||||||||||||| |||||||  
  ug gccuguu  uauuauguuggac auucacg u
uc  u       ac             u       a 


Annotation confidence Not enough data
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Genome context
chrX: 55435984-55436055 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-374b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-374b

Accession MIMAT0013214
Description Equus caballus eca-miR-374b mature miRNA
Sequence 11 - AUAUAAUACAACCUGCUAAGUG - 32
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131