Stem-loop sequence eca-mir-450c

Accession

MI0012967 (change log)

Previous IDs

eca-mir-451a

Description

Equus caballus miR-450c stem-loop

Gene family

MIPF0000128; mir-450

Literature search

1 open access papers mention eca-mir-450c
(1 sentences)

Stem-loop

   gaaa     uc      uuu     u               aa 
5'     gaugc  aacuau   ugcga guguuccuaauacgu  u
       |||||  ||||||   ||||| |||||||||||||||  a
3'     cuaug  uugaua   acguu uacaaggguuaugua  u
   auaa     uu      cuu     u               aa 

Deep sequencing

2160 reads, 50 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 106948953-106949041 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-450c

• eca-mir-424: chrX: 106954949-106955046 [-]
• eca-mir-503: chrX: 106954617-106954687 [-]
• eca-mir-542: chrX: 106949741-106949826 [-]
• eca-mir-450c: chrX: 106948953-106949041 [-]
• eca-mir-450a: chrX: 106948818-106948908 [-]
• eca-mir-450b: chrX: 106948655-106948733 [-]

Database links

• EntrezGene:MIR451A
• miRBase Tracker:MI0012967

Mature sequence eca-miR-450c

• Accession: MIMAT0013222
• Previous IDs: eca-miR-451a
• Sequence: 18 - uuuugcgauguguuccuaauac - 39
• Deep sequencing: 2154 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).