Stem-loop eca-mir-450c

Accession

MI0012967

Description

Equus caballus eca-mir-450c precursor miRNA

Gene family

MIPF0000128; mir-450

Literature search

1 open access papers mention eca-mir-450c
(1 sentences)

Sequence

1292 reads, 196 reads per million, 1 experiments

gaaagaugcucaacuauUUUUGCGAUGUGUUCCUAAUACguaauauaaauguauugggaacauuuugcauucauaguuuuguaucaaua
....(((((..((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))..)))))....

Structure

gaaa     uc      UUU     U               aa 
    gaugc  aacuau   UGCGA GUGUUCCUAAUACgu  u
    |||||  ||||||   ||||| |||||||||||||||  a
    cuaug  uugaua   acguu uacaaggguuaugua  u
auaa     uu      cuu     u               aa 

Annotation confidence Not enough data

Genome context

chrX: 106948953-106949041 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-450c

Mature eca-miR-450c

• Accession: MIMAT0013222
• Description: Equus caballus eca-miR-450c mature miRNA
• Sequence: 18 - UUUUGCGAUGUGUUCCUAAUAC - 39
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131