Stem-loop sequence eca-mir-500-1

Accession

MI0012968 (change log)

Previous IDs

eca-mir-500

Description

Equus caballus miR-500 stem-loop

Gene family

MIPF0000139; mir-500

Literature search

1 open access papers mention eca-mir-500-1
(1 sentences)

Stem-loop

       c c     -u         uac ug    -aga     g 
5' gcuc c cucuc  aauccuugc   c  ggug    guguu u
   |||| | |||||  |||||||||   |  ||||    ||||| c
3' cgag g gagag  uuaggaacg   g  ccac    cguaa u
       a c     cc         --- gu    guaa     g 

Deep sequencing

785 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 40073284-40073367 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000011707 ; CLCN5-201; intron 1

Clustered miRNAs

< 10kb from eca-mir-500-1

• eca-mir-532: chrX: 40068460-40068549 [+]
• eca-mir-188: chrX: 40068847-40068914 [+]
• eca-mir-500-1: chrX: 40073284-40073367 [+]
• eca-mir-362: chrX: 40073827-40073892 [+]
• eca-mir-501: chrX: 40074566-40074649 [+]
• eca-mir-500-2: chrX: 40075101-40075184 [+]
• eca-mir-660: chrX: 40076530-40076626 [+]
• eca-mir-502: chrX: 40077407-40077486 [+]

Database links

• EntrezGene:MIR500
• miRBase Tracker:MI0012968

Mature sequence eca-miR-500

• Accession: MIMAT0013223
• Sequence: 13 - uaauccuugcuaccugggugaga - 35
• Deep sequencing: 170 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).