Stem-loop sequence eca-mir-500-2

Accession

MI0012969 (change log)

Description

Equus caballus miR-500-2 stem-loop

Gene family

MIPF0000139; mir-500

Literature search

1 open access papers mention eca-mir-500-2
(1 sentences)

Stem-loop

       c       -u         uac ug    agag   uuu 
5' gcuc cccucuc  aauccuugc   c  ggug    ugc   c
   |||| |||||||  |||||||||   |  ||||    |||   u
3' ugag gggagag  uuaggaacg   g  ccac    acg   g
       a       cc         --- gu    -gua   uaa 

Deep sequencing

785 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 40075101-40075184 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000011707 ; CLCN5-201; intron 1

Clustered miRNAs

< 10kb from eca-mir-500-2

• eca-mir-532: chrX: 40068460-40068549 [+]
• eca-mir-188: chrX: 40068847-40068914 [+]
• eca-mir-500-1: chrX: 40073284-40073367 [+]
• eca-mir-362: chrX: 40073827-40073892 [+]
• eca-mir-501: chrX: 40074566-40074649 [+]
• eca-mir-500-2: chrX: 40075101-40075184 [+]
• eca-mir-660: chrX: 40076530-40076626 [+]
• eca-mir-502: chrX: 40077407-40077486 [+]

Database links

• EntrezGene:MIR500-2
• miRBase Tracker:MI0012969

Mature sequence eca-miR-500

• Accession: MIMAT0013223
• Sequence: 13 - uaauccuugcuaccugggugaga - 35
• Deep sequencing: 170 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).