Stem-loop sequence eca-mir-508

Accession

MI0012976 (change log)

Description

Equus caballus miR-508 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

1 open access papers mention eca-mir-508
(1 sentences)

Stem-loop

   ---     -----  -  agc   -     g   c               u  u   cauaga 
5'    accac     uc uc   ugg gugua ugc cuacuccagagggug ca uca      c
      |||||     || ||   ||| ||||| ||| ||||||||||||||| || |||       
3'    uggug     ag ag   acu cacau aug gaugagguuuuccac gu agu      u
   cgg     uauau  c  -gu   a     a   a               u  u   acgaaa 

Deep sequencing

2601 reads, 150 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 116765762-116765878 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-508

• eca-mir-507b: chrX: 116771992-116772128 [-]
• eca-mir-508: chrX: 116765762-116765878 [-]
• eca-mir-507a: chrX: 116755935-116756029 [-]

Database links

• EntrezGene:MIR508
• miRBase Tracker:MI0012976

Mature sequence eca-miR-508-5p

• Accession: MIMAT0013231
• Sequence: 27 - uacuccagagggugucauucaca - 49
• Deep sequencing: 34 reads, 1 experiments
• Evidence: not experimental

Mature sequence eca-miR-508-3p

• Accession: MIMAT0013232
• Sequence: 62 - ugauugucaccuuuuggaguaga - 84
• Deep sequencing: 2561 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).