Stem-loop sequence eca-mir-509a

Accession

MI0012977 (change log)

Previous IDs

eca-mir-509

Description

Equus caballus miR-509 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

1 open access papers mention eca-mir-509a
(1 sentences)

Stem-loop

   ----   ac   -     g   cc    -     ca   g       --g  u 
5'     cau  ugu gugug uac  uacu gcaga  gug caaucau   ua a
       |||  ||| ||||| |||  |||| |||||  ||| |||||||   ||  
3'     gua  aca uacac aug  guga cgucu  cac guuagua   au a
   uaga   -c   g     a   au    a     -c   a       aaa  u 

Deep sequencing

5026 reads, 250 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 116788793-116788890 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-509a

• eca-mir-8908n: chrX: 116796896-116797040 [-]
• eca-mir-514: chrX: 116793914-116794002 [-]
• eca-mir-509a: chrX: 116788793-116788890 [-]
• eca-mir-509b: chrX: 116783204-116783336 [-]

Database links

• EntrezGene:MIR509
• miRBase Tracker:MI0012977

Mature sequence eca-miR-509a-5p

• Accession: MIMAT0013233
• Previous IDs: eca-miR-509-5p
• Sequence: 20 - uacugcagacaguggcaauca - 40
• Deep sequencing: 2148 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).