Stem-loop sequence eca-mir-514

AccessionMI0012978 (change log)
DescriptionEquus caballus miR-514 stem-loop
Gene family MIPF0000130; mir-506
   uucuuuu   gg  cc      -     aa  g         aua 
5'        ugu  ua  cuacuc cagag  ug caaucaugu   a
          |||  ||  |||||| |||||  || |||||||||    
3'        acg  au  ggugag gucuc  ac guuagugua   c
   -uucagu   ua  aa      u     -c  a         aau 
Get sequence
Deep sequencing
3996 reads, 150 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (EquCab2.0; GCF_000002305.2) Overlapping transcripts
chrX: 116793914-116794002 [-]
Clustered miRNAs
< 10kb from eca-mir-514
eca-mir-514bchrX: 116800086-116800180 [-]
eca-mir-8908nchrX: 116796896-116797040 [-]
eca-mir-514chrX: 116793914-116794002 [-]
eca-mir-509achrX: 116788793-116788890 [-]
Database links

Mature sequence eca-miR-514

Accession MIMAT0013234

55 - 


 - 75

Get sequence
Deep sequencing3994 reads, 1 experiments
Evidence not experimental


PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).