Stem-loop sequence eca-mir-514

Accession

MI0012978 (change log)

Description

Equus caballus miR-514 stem-loop

Gene family

MIPF0000130; mir-506

Stem-loop

   uucuuuu   gg  cc      -     aa  g         aua 
5'        ugu  ua  cuacuc cagag  ug caaucaugu   a
          |||  ||  |||||| |||||  || |||||||||    
3'        acg  au  ggugag gucuc  ac guuagugua   c
   -uucagu   ua  aa      u     -c  a         aau 

Deep sequencing

3996 reads, 150 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 116793914-116794002 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-514

• eca-mir-514b: chrX: 116800086-116800180 [-]
• eca-mir-8908n: chrX: 116796896-116797040 [-]
• eca-mir-514: chrX: 116793914-116794002 [-]
• eca-mir-509a: chrX: 116788793-116788890 [-]

Database links

• EntrezGene:MIR514
• miRBase Tracker:MI0012978

Mature sequence eca-miR-514

• Accession: MIMAT0013234
• Sequence: 55 - auugacaccucugugagugga - 75
• Deep sequencing: 3994 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).