miRBase entry: eca-mir-514

Stem-loop eca-mir-514


Accession
MI0012978
Description
Equus caballus eca-mir-514 precursor miRNA
Gene family
MIPF0000130; mir-506


Sequence

419 reads, 63 reads per million, 1 experiments
uucuuuuugugguacccuacuccagagaauggcaaucauguauaacuaaaugugAUUGACACCUCUGUGAGUGGAauaaugcaugacuu
.......((((.((..(((((((((((..((.(((((((((........))))))))).)).))))).))))))..)).))))......

Structure
uucuuuu    g  cc      -     aa  g         aua 
       ugug ua  cuacuc cagag  ug caaucaugu   a
       |||| ||  |||||| |||||  || |||||||||    
       acgu au  GGUGAG GUCUC  AC GUUAgugua   c
-uucagu    a  aA      U     -C  A         aau 


Annotation confidence Not enough data
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Genome context
chrX: 116793914-116794002 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from eca-mir-514
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-514

Accession MIMAT0013234
Description Equus caballus eca-miR-514 mature miRNA
Sequence 55 - AUUGACACCUCUGUGAGUGGA - 75
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131