miRBase entry: eca-mir-542

Stem-loop eca-mir-542


Accession
MI0012980
Description
Equus caballus eca-mir-542 precursor miRNA
Gene family
MIPF0000185; mir-542

Literature search
1 open access papers mention eca-mir-542
(1 sentences)

Sequence

1719 reads, 260 reads per million, 1 experiments
aggaccucagacauCUCGGGGAUCAUCAUGUCACGAgauaccacugugcacuUGUGACAGAUUGAUAACUGAAAggucugggagcc
.((..(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))..))

Structure
a  ac       auC    GG    UCA         -a   c 
 gg  cucagac   UCGG  AUCA   UGUCACGAg  uac a
 ||  |||||||   ||||  ||||   |||||||||  |||  
 cc  gggucug   AGUC  UAGU   ACAGUGUuc  gug c
-  ga       gAA    AA    UAG         ac   u 


Annotation confidence High
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Genome context
chrX: 106949741-106949826 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from eca-mir-542
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-542-5p

Accession MIMAT0013237
Description Equus caballus eca-miR-542-5p mature miRNA
Sequence 15 - CUCGGGGAUCAUCAUGUCACGA - 36
Evidence not_experimental

Mature eca-miR-542-3p

Accession MIMAT0013238
Description Equus caballus eca-miR-542-3p mature miRNA
Sequence 53 - UGUGACAGAUUGAUAACUGAAA - 74
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131