Stem-loop eca-mir-98

Accession

MI0012988

Description

Equus caballus eca-mir-98 precursor miRNA

Gene family

MIPF0000002; let-7

Sequence

1705 reads, 258 reads per million, 1 experiments

aggauucugcucaugccagggUGAGGUAGUAAGUUGUAUUGUUgugggguagggauuuuaggccccaauuagaagauaacuauacaacuuacuacuuucccugguguguggcauauuca
.((((..((((((((((((((.(((((((((((((((((.((((((((((...........)))))).........)))).))))))))))))))))))))))))))).)))).)))).

Structure

a    uc    -          U                 U    ---------      aggg 
 ggau  ugcu caugccaggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||||  |||| |||||||||| ||||||||||||||||| ||||         ||||||    u
 cuua  acgg gugugguccc uuucaucauucaacaua caau         accccg    u
a    -u    u          -                 u    agaagauua      gauu 

Annotation confidence Not enough data

Genome context

chrX: 44776534-44776652 [+]

Mature eca-miR-98

• Accession: MIMAT0013247
• Description: Equus caballus eca-miR-98 mature miRNA
• Sequence: 22 - UGAGGUAGUAAGUUGUAUUGUU - 43
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131