Stem-loop sequence bmo-mir-2856-1

Accession

MI0012998 (change log)

Description

Bombyx mori miR-2856-1 stem-loop

Gene family

MIPF0001071; mir-2856

Literature search

1 open access papers mention bmo-mir-2856-1
(1 sentences)

Stem-loop

   ac    c  uc      -gu     ga     ag   g  acag 
5'   ugua ua  uugucu   gguuc  gggug  auu uc    c
     |||| ||  ||||||   |||||  |||||  ||| ||    a
3'   auau au  aacaga   ccaag  cuuac  ugg gg    g
   aa    a  -u      aug     ag     -a   g  auau 

Deep sequencing

62 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15162v1; GCA_000151625.1): NW_004582014.1: 3494478-3494565 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0012998

Mature sequence bmo-miR-2856-5p

• Accession: MIMAT0013792
• Previous IDs: bmo-miR-2856*
• Sequence: 12 - uugucugugguucgagggug - 31
• Deep sequencing: 6 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence bmo-miR-2856-3p

• Accession: MIMAT0013793
• Previous IDs: bmo-miR-2856
• Sequence: 57 - acauucgagaaccguaagacaa - 78
• Deep sequencing: 106 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003F3FC7_7091

References

1. PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).