Stem-loop osa-MIR1863c

Accession

MI0013044

Description

Oryza sativa osa-MIR1863c precursor miRNA

Gene family

MIPF0000932; MIR1863

Literature search

3 open access papers mention osa-MIR1863c
(6 sentences)

Sequence

109 reads, 87 reads per million, 2 experiments

agcaaugcaucaguuauguuuccuggaucauuaaaucauugaauguuuaucuagcaccaaucugcugcugaucuguuuguagucaugaaaagcacuuuaugaucugaaagugcuggcuguaugccaugguuuuccccauucuaugguuauuauugcaaucgugacuuaauagugaugcaauaaucaguaguggauucguguuggcucuacuucggguuuaggaucauaguuauuagcucugauaccauguuauugauuUAGAAACUUGGCUGAUGCAUUACUuuuggagac
((.(((((((((((((.(((((.(((((((.((((((..((((.((....(((((((.(((((((((((((((((((...((((((((..((((((((........)))))))).((.(((.(((((((...........)))))))...))).))..)))))))).)))))..........)))))))))))))).)))))))....))))))))))))((((((.((((...)))).)))).)).......)))))))))))).))))))))))))).)).........

Structure

---------  c             u     c       --------------------------------u      au    u  uuau       c              ----------     ugu        aaagcacuuuaugaucugaaagugcug  u   --u       uuuu 
         ag aaugcaucaguua guuuc uggauca                                 uaaauc  ugaa gu    cuagcac aaucugcugcugau          cuguu   agucauga                           gc gua   gccaugg    c
         || ||||||||||||| ||||| |||||||                                 ||||||  |||| ||    ||||||| ||||||||||||||          |||||   ||||||||                           || |||   |||||||    c
         UC UUACGUAGUCGGU CAAAG AUuuagu                                 auuugg  gcuu ca    gguugug uuaggugaugacua          gauaa   ucagugcu                           cg uau   ugguauc    c
cagagguuu  A             U     -       uauuguaccauagucucgauuauugauacuagg      --    -  ucuc       c              auaacguagu     --u        -------------------------aa  u   uau       uuac 

Annotation confidence Not enough data

Genome context

Chr12: 4869207-4869497 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1863c

Mature osa-miR1863c

• Accession: MIMAT0013830
• Description: Oryza sativa osa-miR1863c mature miRNA
• Sequence: 259 - UAGAAACUUGGCUGAUGCAUUACU - 282
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207