Stem-loop sequence osa-MIR396h

Accession

MI0013048 (change log)

Description

Oryza sativa miR396h stem-loop

Gene family

MIPF0000882; MIR396_2

Literature search

53 open access papers mention osa-MIR396h
(132 sentences)

Stem-loop

   ag   ----    -gg        -g    ug   guggg   g      g  ga g     ---ga   g  g 
5'   ggc    gccg   gaggaggu  gugg  gug     ggc acgccg cg  g uguuc     cgc gc g
     |||    ||||   ||||||||  ||||  |||     ||| |||||| ||  | |||||     ||| ||  
3'   ccg    uggc   uucuuucg  cacc  uac     ccg ugcggc gc  c gcagg     gcg ug a
   ca   uucu    aag        ga    uu   aggaa   g      g  gg g     aggag   g  g 

Deep sequencing

2123 reads, 1.3e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr2: 32841661-32841801 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0013048

Mature sequence osa-miR396h

• Accession: MIMAT0013834
• Sequence: 111 - uccacaggcuuucuugaacgg - 131
• Deep sequencing: 2112 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000522131_39947

References

1. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).