miRBase entry: osa-MIR1863b

Stem-loop osa-MIR1863b


Accession
MI0013050
Description
Oryza sativa osa-MIR1863b precursor miRNA
Gene family
MIPF0000932; MIR1863

Literature search
3 open access papers mention osa-MIR1863b
(6 sentences)

Sequence

89 reads, 69 reads per million, 2 experiments
caauagcaaugcaucaguuacguuuccuacauaguuacaugguaucagagcugaaauccuaaaccaaugaauguuuauccagcaccaauccccugcugcuaggagcuguagcucucggggcaguaccuaauccgcugcugaucuguuucuagucaugaaaagcacugugaucuguaagugcuugcugcaugccaugguuuugcccaauucuauggccaucguuggauucgugaccugacagugaugcaauaaucagugauggauuuguguuggcucuacuugggguugaggaucuuagcuguuAGCUCUGAUACCAUGUUAACUGUUuAGAGACUUGGCUGAUGCAUUACUuuuggaaac
(((.((.(((((((((((((.(((((.((.((((((((((((((((((((((((.(((((.((((....((.((....(((((((........(((((((.(((((....)))))...)))))))...((((((.((((((((((((....(((((((.(((((((..........))))))).......(((((((..((....))..))))))).(((....))))))))))..)))))..........))))))).)))))).)))))))....))))..)))).)))))........))))))))))))))))).))))))).))))))).))))))))))))).)).))).....

Structure
-----   u  c             c     c  c       -                 -------a     a    aaug  u  uuau       caauccccugcugcuaggagcuguagcucucggggcaguaccu      c       ----------     ucua       aaagcacugugaucuguaagugcuugcugcaug 
     caa ag aaugcaucaguua guuuc ua auaguua caugguaucagagcuga        auccu aacc    aa gu    ccagcac                                           aauccg ugcugau          cuguu    gucauga                                 c
     ||| || ||||||||||||| ||||| || ||||||| |||||||||||||||||        ||||| ||||    || ||    |||||||                                           |||||| |||||||          |||||    |||||||                                 c
     guu UC UUACGUAGUCGGU CAGAG Au UGUCAAU GUACCAUAGUCUCGAuu        uagga uugg    uu ca    gguugug                                           uuaggu gugacua          gacag    cagugcu                                 a
caaag   u  A             U     -  U       U                 gucgauuc     g    --gg  -  ucuc       ------------------------------------------u      a       auaacguagu     --uc       uagguugcuaccgguaucuuaacccguuuuggu 


Annotation confidence Not enough data
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Genome context
Chr12: 4867257-4867616 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR1863b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR1863b

Accession MIMAT0013836
Description Oryza sativa osa-miR1863b mature miRNA
Sequence 304 - AGCUCUGAUACCAUGUUAACUGUU - 327
Evidence experimental
Illumina [1]

Mature osa-miR1863b.2

Accession MIMAT0020950
Description Oryza sativa osa-miR1863b.2 mature miRNA
Sequence 329 - AGAGACUUGGCUGAUGCAUUACU - 351
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435

  2. PubMed ID: 21525786
    Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
    "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
    "RNA Biol (2011) 8:538-547