miRBase entry: ssc-mir-191

Stem-loop ssc-mir-191


Accession
MI0013095
Description
Sus scrofa ssc-mir-191 precursor miRNA
Gene family
MIPF0000194; mir-191

Literature search
11 open access papers mention ssc-mir-191
(24 sentences)

Sequence

2519 reads, 787 reads per million, 13 experiments
acagcgggCAACGGAAUCCCAAAAGCAGCUGuugucuccagagcauuccagcugcacuuggauuucguucccugcucucu
..((((((.((((((((((.((..(((((((.(((.......)))...)))))))..)))))))))))).))))))....

Structure
--ac      C          C  AA       --u   cu 
    agcggg AACGGAAUCC AA  GCAGCUG   ugu  c
    |||||| |||||||||| ||  |||||||   |||  c
    ucgucc uugcuuuagg uu  cgucgac   acg  a
ucuc      c          -  ca       cuu   ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr13: 34898601-34898680 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-191
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-191

Accession MIMAT0013876
Description Sus scrofa ssc-miR-191 mature miRNA
Sequence 9 - CAACGGAAUCCCAAAAGCAGCUG - 31
Evidence experimental
Illumina [1,3-4], cloned [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100