miRBase entry: ssc-mir-10a

Stem-loop ssc-mir-10a


Accession
MI0013101
Description
Sus scrofa ssc-mir-10a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
19 open access papers mention ssc-mir-10a
(60 sentences)

Sequence

67 reads, 71 reads per million, 11 experiments
ucuguauaUACCCUGUAGAUCCGAAUUUGUguaaggaauuuuguggucaCAAAUUCGUAUCUAGGGGAAUauguaguuga
.((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))....

Structure
---u        A    G     C          uaaggaa 
    cuguauaU CCCU UAGAU CGAAUUUGUg       u
    |||||||| |||| ||||| ||||||||||        
    gauguaUA GGGG AUCUA GCUUAAACac       u
aguu        A    -     U          ugguguu 


Annotation confidence Not enough data
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Genome context
chr12: 24791267-24791346 [-]

Database links

Mature ssc-miR-10a-5p

Accession MIMAT0013884
Description Sus scrofa ssc-miR-10a-5p mature miRNA
Sequence 9 - UACCCUGUAGAUCCGAAUUUGU - 30
Evidence experimental
Illumina [1-3]

Mature ssc-miR-10a-3p

Accession MIMAT0022954
Description Sus scrofa ssc-miR-10a-3p mature miRNA
Sequence 50 - CAAAUUCGUAUCUAGGGGAAU - 70
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100