miRBase entry: ssc-mir-24-2

Stem-loop ssc-mir-24-2


Accession
MI0013111
Description
Sus scrofa ssc-mir-24-2 precursor miRNA
Gene family
MIPF0000041; mir-24

Literature search
33 open access papers mention ssc-mir-24-2
(81 sentences)

Sequence

1279 reads, 451 reads per million, 12 experiments
gacccgcccuccgGUGCCUACUGAGCUGAUAUCAGUucucauuuuacacacUGGCUCAGUUCAGCAGGAACAGgagucga
....((..((((.((.(((.(((((((((..(((((.............))))).))))))))).))).)).)))).)).

Structure
gacc  cc    g  G   A         UA     ucuca 
    cg  cucc GU CCU CUGAGCUGA  UCAGU     u
    ||  |||| || ||| |||||||||  |||||     u
    gc  gagG CA GGA GACUUGACU  GGUca     u
---a  -u    A  A   C         -C     cacau 


Annotation confidence Not enough data
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Genome context
chr10: 31340334-31340413 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-24-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-24-3p

Accession MIMAT0002134
Description Sus scrofa ssc-miR-24-3p mature miRNA
Sequence 52 - UGGCUCAGUUCAGCAGGAACAG - 73
Evidence experimental
Illumina [1,3-4], cloned [2]

Mature ssc-miR-24-2-5p

Accession MIMAT0026468
Description Sus scrofa ssc-miR-24-2-5p mature miRNA
Sequence 14 - GUGCCUACUGAGCUGAUAUCAGU - 36
Evidence not_experimental

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100