miRBase entry: ssc-mir-98

Stem-loop ssc-mir-98


Accession
MI0013122
Description
Sus scrofa ssc-mir-98 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
8 open access papers mention ssc-mir-98
(22 sentences)

Sequence

541 reads, 200 reads per million, 15 experiments
gggUGAGGUAGUAAGUUGUAUUGUUgugggguagggauuuuaggccccaauuagaagauaacuauacaacuuacuacuuu
....(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))

Structure
gggU                 U    ---------      aggg 
    GAGGUAGUAAGUUGUAU GUUg         uggggu    a
    ||||||||||||||||| ||||         ||||||    u
    uuucaucauucaacaua caau         accccg    u
----                 u    agaagauua      gauu 


Annotation confidence Not enough data
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Genome context
chrX: 51800864-51800943 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-98
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-98

Accession MIMAT0013905
Description Sus scrofa ssc-miR-98 mature miRNA
Sequence 4 - UGAGGUAGUAAGUUGUAUUGUU - 25
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100