miRBase entry: ssc-mir-130b

Stem-loop ssc-mir-130b


Accession
MI0013136
Description
Sus scrofa ssc-mir-130b precursor miRNA
Gene family
MIPF0000034; mir-130

Literature search
7 open access papers mention ssc-mir-130b
(13 sentences)

Sequence

9 reads, 28 reads per million, 6 experiments
gccugccugacACUCUUUCCCUGUUGCACUACUgugggccacugggaagCAGUGCAAUGAUGAAAGGGCAUcagucaggc
(((((.((((..(((((((..(((((((((.((..((....))....)).)))))))))..)))))))..)))).)))))

Structure
     c    cA       CC         A  --gu  g 
gccug cuga  CUCUUUC  UGUUGCACU CU    gg c
||||| ||||  |||||||  ||||||||| ||    ||  
cggac gacU  GGGAAAG  GUAACGUGA ga    uc c
     u    AC       UA         C  aggg  a 


Annotation confidence Not enough data
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Genome context
chr14: 53695562-53695641 [-]

Database links

Mature ssc-miR-130b-3p

Accession MIMAT0013922
Description Sus scrofa ssc-miR-130b-3p mature miRNA
Sequence 50 - CAGUGCAAUGAUGAAAGGGCAU - 71
Evidence experimental
Illumina [1,3-4], cloned [2]

Mature ssc-miR-130b-5p

Accession MIMAT0037366
Description Sus scrofa ssc-miR-130b-5p mature miRNA
Sequence 12 - ACUCUUUCCCUGUUGCACUACU - 33
Evidence experimental
Illumina [5]

References

  1. PubMed ID: 19917043
    MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
    "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
    "Anim Genet (2010) 41:159-168

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100

  5. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252