Stem-loop sequence ssc-mir-19b-2

Accession

MI0013159 (change log)

Description

Sus scrofa miR-19b-2 stem-loop

Gene family

MIPF0000011; mir-19

Literature search

15 open access papers mention ssc-mir-19b-2
(29 sentences)

Stem-loop

   --                -  -      uuu    g      u 
5'   uacaguuaguuuugca gg uuugca   cagc uaugua g
     |||||||||||||||| || ||||||   |||| ||||||  
3'   guguuagucaaaacgu cc aaacgu   gucg guauau u
   ua                a  u      ---    -      g 

Deep sequencing

31131 reads, 9.55e+03 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrX: 126199650-126199729 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ssc-mir-19b-2

• ssc-mir-106a: chrX: 126200183-126200263 [-]
• ssc-mir-18b: chrX: 126200019-126200101 [-]
• ssc-mir-20b-1: chrX: 126199775-126199854 [-]
• ssc-mir-19b-2: chrX: 126199650-126199729 [-]
• ssc-mir-92a-2: chrX: 126199512-126199591 [-]
• ssc-mir-363-1: chrX: 126199347-126199426 [-]

Database links

• EntrezGene:MIR19B-2
• miRBase Tracker:MI0013159

Mature sequence ssc-miR-19b

• Accession: MIMAT0013950
• Sequence: 51 - ugugcaaauccaugcaaaacuga - 73
• Deep sequencing: 57472 reads, 15 experiments
• Evidence: experimental; Illumina [1,3-4], cloned [2]

References

1. PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
3. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).