miRBase entry: osa-MIR2921

Stem-loop osa-MIR2921


Accession
MI0013263
Description
Oryza sativa osa-MIR2921 precursor miRNA


Sequence

15 reads, 16 reads per million, 2 experiments
auAAGAACUUAAUAUAACUUUAAAGCaauaagaucuuaauauaaagggcagauuuagcauaacaauuaagcauaugauauuagaauagcuaaaucagguaagaucggcugaaacuccgauacuaucucuauaaaugaucauaaaacaagcuagauaucacaauuauagauagaacuuaauagaucgaacucaaccgaugcaacauuaagcauauaaaauaacuguaagaucuaaacaaga
..............................((((((((............((((((((.............................)))))))).((((..(((((........)))))..))))(((((((.((((..((........))...))))...))))))).....((((((..((((........)))).....))))))...............))))))))........

Structure
auAAGAACUUAAUAUAACUUUAAAGCaaua        auauaaagggcagauuuagcauaacaauuaagcauaugauauuagaauagcuaaaucagguaagaucggcugaaacuccgauacuauc       --a    -ca  aaa 
                              agaucuua                                                                                        ucuauaa   ugau   ua   c
                              ||||||||                                                                                        |||||||   ||||   ||    
                              ucuagaau                                                                                        agauauu   acua   au   a
----------------------agaacaaa        ---------------------------------gucaauaaaauauacgaauuacaacguagccaacucaagcuagauaauucaagau       aac    uag  cga 


Annotation confidence Not enough data
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Genome context
Chr11: 22213555-22213794 [+]

Database links

Mature osa-miR2921

Accession MIMAT0014052
Description Oryza sativa osa-miR2921 mature miRNA
Sequence 3 - AAGAACUUAAUAUAACUUUAAAGC - 26
Evidence experimental
cloned [1]

References

  1. PubMed ID: 20131478
    Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses
    "Sanan-Mishra N, Kumar V, Sopory SK, Mukherjee SK"
    "Mol Genet Genomics (2009) 282:463-474