Stem-loop ctr-MIR166

Accession

MI0013297

Description

Citrus trifoliata ctr-MIR166 precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention ctr-MIR166
(3 sentences)

Sequence

gguuugucugaaggaucuaggguuaauugggaagcuuuuucuuuugaggggaauguugucuggcucgaggccacuaacuagaucuuugauuuaaucucaguugaucauauauuuguuucauuuuucuuccauaaaauuuaauuauauugagauacccaucauugaucuuaagauaauuaaguuagugacgUCGGACCAGGCUUCAUUCCCCCcaauaauugcuucuaucugcuaugauaucaucuucauuucuuggaggugcugugaucaguucucaaacuuuaguugauuuuuucacaauuuuucuuuuuguuuaauuuauugaucuuguguuguguauauuuguauggucaacggagagaucuuggucauuggccaugagcagauugguguaaugaugaaagauuuugacug
.....((((.((((((((((........((.((..(((((((....)))))))..)).))(((((...)))))....)))))))))).).....((((.((((((((((((..(((..(((........(((..(((((((((((.(((((((...((....))))))))).))))))))))).)))..(.((((..((((...................))))...)))))....(((.((((((((.....)))))))).)))(((((((....((((...((..((............))..))....)))).....))))))).......))).)))..)))))))))))).))))((((((.(((((((((((.........)))).)))))))..))))))..)))..

Structure

gguuu   ugaaggaucuaggguuaauugggaagcuuuuucuuuugaggggaauguugucuggcucgaggccacuaacuagaucuuugauuuaa    a            uu   uu   ----------------------------------uuuucuuccauaaaauuuaauuauauugagauacccaucauugaucuuaagauaauuaaguuagugac U    -CC    UUCAUUCC 
     guc                                                                                      ucuc guugaucauaua  ugu  cau                                                                                                      g CGGA   AGGC        C
     |||                                                                                      |||| ||||||||||||  |||  |||                                                                                                      | ||||   ||||        C
     cag                                                                                      agag caacugguaugu  aua  gug                                                                                                      c gucu   uucg        C
---gu   -------------------------------------uuuuagaaaguaguaaugugguuagacgaguaccgguuacugguucuag    g            uu   -u   uuguguucuaguuauuuaauuuguuuuucuuuuuaacacuuuuuuaguugauuucaaacucuugacuagugucguggagguucuuuacuucuacuauaguau -    auc    uuaauaac 

Annotation confidence Not enough data

Genome context

Unknown

Mature ctr-miR166

• Accession: MIMAT0014071
• Description: Citrus trifoliata ctr-miR166 mature miRNA
• Sequence: 191 - UCGGACCAGGCUUCAUUCCCCC - 212
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685