miRBase entry: bma-mir-57

Stem-loop bma-mir-57


Accession
MI0013331
Description
Brugia malayi bma-mir-57 precursor miRNA
Gene family
MIPF0000271; mir-57

Literature search
1 open access papers mention bma-mir-57
(4 sentences)

Sequence

cuuuuugagcuuguucgucUACCCUGUGGUACCGAGCUGUGUCUgagugauaagcaaacacgaucggucacuggguaaaggaccuugcucu
......((((..(.((.(.(((((.(((..(((((..(((((.((.........)).))))).)))))))).))))).).)).)..)))).

Structure
cuuuuu    uu u  g c     U   GU     GC     C  agu 
      gagc  g uc u UACCC GUG  ACCGA  UGUGU Ug   g
      ||||  | || | ||||| |||  |||||  ||||| ||   a
      cucg  c ag a auggg cac  uggcu  gcaca ac   u
-----u    uu c  g a     u   --     -a     a  gaa 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold28: 44889-44979 [+]

Database links

Mature bma-miR-57

Accession MIMAT0014105
Description Brugia malayi bma-miR-57 mature miRNA
Sequence 20 - UACCCUGUGGUACCGAGCUGUGUCU - 44
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498