Stem-loop bma-mir-71

Accession

MI0013332

Description

Brugia malayi bma-mir-71 precursor miRNA

Gene family

MIPF0000278; mir-71

Literature search

4 open access papers mention bma-mir-71
(39 sentences)

Sequence

agcaugcugugugucgguggUGAAAGACAUGGGUAGUGAgacguuagaauuucaaggucguaucacuauucuguuuuucgccucguaucac
........(((...(((.(((((((((((.((((((((((((.((........)).)))...)))))))))))))))))))))))...)))

Structure

agcaugcu   ugu   u           U         ---   g  aga 
        gug   cgg ggUGAAAGACA GGGUAGUGA   gac uu   a
        |||   ||| ||||||||||| |||||||||   ||| ||    
        cac   gcu ccgcuuuuugu cuuaucacu   cug aa   u
--------   uau   -           -         aug   g  cuu 

Annotation confidence Not enough data

Genome context

Bmal_v3_scaffold75: 45674-45764 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-71

Mature bma-miR-71

• Accession: MIMAT0014106
• Description: Brugia malayi bma-miR-71 mature miRNA
• Sequence: 21 - UGAAAGACAUGGGUAGUGA - 39
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498