miRBase entry: bma-mir-72

Stem-loop bma-mir-72


Accession
MI0013333
Description
Brugia malayi bma-mir-72 precursor miRNA
Gene family
MIPF0000277; mir-72

Literature search
2 open access papers mention bma-mir-72
(2 sentences)

Sequence

ucaugggacacgggacaAGGCAAGAUGUUGGCAUAGCUGAacaugauaacgauuaggcucuaguuuagagccuaaucaauuugcauagagcuucagcagugccacauuaggccau
..................(((..(((((.(((((.((((((((((..((.((((((((((((...))))))))))))..))..)))...).)))))).))))))))))..)))..

Structure
ucaugggacacgggacaA   AA     U     A      - ---   au  -c            g 
                  GGC  GAUGU GGCAU GCUGAa c   aug  aa  gauuaggcucua  
                  |||  ||||| ||||| |||||| |   |||  ||  |||||||||||| u
                  ccg  uuaca ccgug cgacuu g   uac  uu  cuaauccgagau  
----------------ua   ga     -     a      c aga   gu  aa            u 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold8: 872016-872130 [-]

Database links

Mature bma-miR-72

Accession MIMAT0014107
Description Brugia malayi bma-miR-72 mature miRNA
Sequence 18 - AGGCAAGAUGUUGGCAUAGCUGA - 40
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498