miRBase entry: bma-mir-100b

Stem-loop bma-mir-100b


Accession
MI0013339
Description
Brugia malayi bma-mir-100b precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
3 open access papers mention bma-mir-100b
(25 sentences)

Sequence

gugugagguagcacacggucAACCCGUAGAUCCGAACUUGUGuugagauuuucuuccgaacaugaggucggcauucggguagacugcgugu
..........((((.(((((.(((((..(((((((.((((((((..((......))..)))))))).)))).)))))))).))))).))))

Structure
gugugaggua    a     A     UA   -    A        ga  uu 
          gcac cgguc ACCCG  GAU CCGA CUUGUGuu  ga  u
          |||| ||||| |||||  ||| |||| ||||||||  ||   
          ugug gucag ugggc  uua ggcu gaguacaa  cu  u
----------    c     a     --   c    g        gc  uc 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold247: 48104-48194 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-100b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-100b

Accession MIMAT0014113
Description Brugia malayi bma-miR-100b mature miRNA
Sequence 21 - AACCCGUAGAUCCGAACUUGUG - 42
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498