miRBase entry: bma-mir-100c

Stem-loop bma-mir-100c


Accession
MI0013340
Description
Brugia malayi bma-mir-100c precursor miRNA

Literature search
3 open access papers mention bma-mir-100c
(20 sentences)

Sequence

guuuucgaucAACCCGUAGAACUGAAAUCGUGuuugauuuuugcaacacgauucuguucucgggucgauugcuugc
.....(((((.(((((.(((((.(((.(((((((..(....)..)))))))))).)))))))))).))))).....

Structure
guuuu     A     U     U   A       ug u 
     cgauc ACCCG AGAAC GAA UCGUGuu  a u
     ||||| ||||| ||||| ||| |||||||  |  
     guuag ugggc ucuug cuu agcacaa  u u
cguuc     c     -     u   -       cg u 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold1: 4628686-4628761 [-]

Database links

Mature bma-miR-100c

Accession MIMAT0014114
Description Brugia malayi bma-miR-100c mature miRNA
Sequence 11 - AACCCGUAGAACUGAAAUCGUG - 32
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498