Stem-loop sequence osa-MIR395y

Accession

MI0013351 (change log)

Description

Oryza sativa miR395y stem-loop

Gene family

MIPF0000016; MIR395

Literature search

39 open access papers mention osa-MIR395y
(173 sentences)

Stem-loop

   u   c  ag         g             -   aac     uuacuc     ca 
5'  ggc cc  gaguuccuu caagcacuucaca uag   uucag      ucaua  a
    ||| ||  ||||||||| ||||||||||||| |||   |||||      |||||   
3'  ccg gg  cucaagggg guuugugaagugu auc   gaguu      agugu  c
   a   u  cu         -             u   gaa     ----uu     ua 

Deep sequencing

43 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr8: 3299815-3299924 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR395y

• osa-MIR395h: Chr8: 3299144-3299255 [+]
• osa-MIR395i: Chr8: 3299319-3299417 [+]
• osa-MIR395j: Chr8: 3299479-3299590 [+]
• osa-MIR395k: Chr8: 3299652-3299750 [+]
• osa-MIR395y: Chr8: 3299815-3299924 [+]
• osa-MIR395l: Chr8: 3299997-3300090 [+]

Database links

• miRBase Tracker:MI0013351

Mature sequence osa-miR395y

• Accession: MIMAT0014125
• Sequence: 81 - gugaaguguuugggggaacuc - 101
• Deep sequencing: 41 reads, 2 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000034BBE9_39947

References

1. PMID:19951405 "Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins" Merchan F, Boualem A, Crespi M, Frugier F Genome Biol. 10:R136(2009).