miRBase entry: ath-MIR2937

Stem-loop ath-MIR2937


Accession
MI0013367
Description
Arabidopsis thaliana ath-MIR2937 precursor miRNA

Literature search
1 open access papers mention ath-MIR2937
(1 sentences)

Sequence

cauuuuccguuaguaaccuauuggccauuugauaacuccaacaaggacuaaucaaacgagaaccauuugaugauguuaauggugaaacacaagacccaucagcaaacucuccuccaauggucacaccacuacaaaacauuagauccuuuaaugacuccaacaaaacucuuaugaugugggugcuagugaggccaguaccguaguuaauauugauguguuuuuggucugacugucuacaaaagaaauccacaucAUAAGAGCUGUUGAAGGAGUCauuaaaagaucuaaugguuugaucauuagaggaggguuuguugaugggucguguguugcaucauuaauaucaucaaaugguucucguuuaauucguauuuguuguagucaucaaauagccaauauguuacgcuauguaccacgaaaaug
((((((((((..(((((.(((((((.(((((((.(((.(((((((.((.(((.(((((((((((((((((((((((((((((((.((((((.((((((((((((((((((((((.((((((((.((((..........(((((((.((((((((((((((((...((((((((((((((((..((((.(((((((.((((((((....))).))).))..))))))).))))(((.....))).)))))))))))))))).))))...)))))))))))).))))))))))).)))))))).)))))))))))))))))))))).)))))).))))))))))))))))))))))))))))))).))).)).))))))).))).))))))).))))))).)))))...)))......)))))))

Structure
       ------   -ua     c       c       a   c       g  u   c                               a      a                      c        c    cuacaaaaca       c            ---    aaa                ----------gc    g       -u  -   -   u 
cauuuuc      cgu   guaac uauuggc auuugau acu caacaag ac aau aaacgagaaccauuugaugauguuaauggug aacaca gacccaucagcaaacucuccuc aaugguca acca          uuagauc uuuaaugacucc   aaca   cucuuaugaugugggu            uagu aggccag  ac cgu agu a
|||||||      |||   ||||| ||||||| ||||||| ||| ||||||| || ||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||          ||||||| ||||||||||||   ||||   ||||||||||||||||            |||| |||||||  || ||| |||  
guaaaag      gua   cauug auaaccg uaaacua uga guuguuu ug uua uuugcucuugguaaacuacuauaauuacuac uugugu cuggguaguuguuugggaggag uuacuagu uggu          aaucuag aaauuaCUGAGG   UUGU   GAGAAUAcuacaccua            guca ucugguu  ug gua uua a
       caccau   ucg     u       a       c   u       a  c   a                               g      g                      a        u    ----------       a            AAG    --C                aagaaaacaucu    g       uu  u   g   u 


Annotation confidence Not enough data
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Genome context
chr5: 13622416-13622838 [+]

Database links

Mature ath-miR2937

Accession MIMAT0014141
Description Arabidopsis thaliana ath-miR2937 mature miRNA
Sequence 254 - AUAAGAGCUGUUGAAGGAGUC - 274
Evidence experimental
454 [1]

References

  1. PubMed ID: 20042113
    MicroRNA and tasiRNA diversity in mature pollen of Arabidopsis thaliana
    Grant-Downton R, Le Trionnaire G, Schmid R, Rodriguez-Enriquez J, Hafidh S, Mehdi S, Twell D, Dickinson H
    BMC Genomics (2009) 10:643