miRBase entry: rco-MIR160a

Stem-loop rco-MIR160a


Accession
MI0013379
Description
Ricinus communis rco-MIR160a precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
2 open access papers mention rco-MIR160a
(4 sentences)

Sequence

uugugUGCCUGGCUCCCUGUAUGCCAuuugugaaguucaucagaagcuugguggucuccgcagauggcaugcaaggagccaugcaugcugcu
..((((((.(((((((.(((((((((((((((.((.(((((((....))))))).)).))))))))))))))).))))))).))))))....

Structure
--uu      C       C               a  u       a 
    gugUGC UGGCUCC UGUAUGCCAuuugug ag ucaucag a
    |||||| ||||||| ||||||||||||||| || |||||||  
    cguacg accgagg acguacgguagacgc uc ggugguu g
ucgu      u       a               c  u       c 


Annotation confidence Not enough data
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Genome context
EQ973837.1: 860029-860120 [+]

Database links

Mature rco-miR160a

Accession MIMAT0014153
Description Ricinus communis rco-miR160a mature miRNA
Sequence 6 - UGCCUGGCUCCCUGUAUGCCA - 26
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995