miRBase entry: rco-MIR162

Stem-loop rco-MIR162


Accession
MI0013381
Description
Ricinus communis rco-MIR162 precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
1 open access papers mention rco-MIR162
(2 sentences)

Sequence

ucacuggaggcagcgguucaucgaucucuuccuggaagauuuuguugugaaacaaaaauaaaacgcaugaaucgaUCGAUAAACCUCUGCAUCCAGcgcuu
...(((((.((((.((((.(((((((..(((.((.....(((((((....)))))))........)).)))..))))))).)))).)))).))))).....

Structure
--uca     g    c    c       uc   c  ---gaaga       g 
     cugga gcag gguu aucgauc  uuc ug        uuuuguu u
     ||||| |||| |||| |||||||  ||| ||        |||||||  
     GACCU CGUC CCAA UAGCUag  aag ac        aaaacaa g
uucgc     A    U    A       cu   u  gcaaaaua       a 


Annotation confidence Not enough data
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Genome context
EQ973775.1: 2654842-2654942 [+]

Database links

Mature rco-miR162

Accession MIMAT0014155
Description Ricinus communis rco-miR162 mature miRNA
Sequence 76 - UCGAUAAACCUCUGCAUCCAG - 96
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995