miRBase entry: rco-MIR164c

Stem-loop rco-MIR164c


Accession
MI0013384
Description
Ricinus communis rco-MIR164c precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
2 open access papers mention rco-MIR164c
(2 sentences)

Sequence

caagaUGGAGAAGCAGGGCACGUGCAuuacuaacucaugcauaauugaacauacauacauacgcauuuuucuugcuggagguuaguucuucaugugcccgucuuccccaucaugac
((.(((((.((((..(((((((((....((((((((..(((...............................)))..)).))))))....)))))))))..)))).))))).))..

Structure
--  a     A    CA         CAuu      -  au   uaauugaacauaca 
  ca gaUGG GAAG  GGGCACGUG    acuaac uc  gca              u
  || ||||| ||||  |||||||||    |||||| ||  |||              a
  gu cuacc cuuc  cccguguac    ugauug ag  cgu              c
ca  a     c    ug         uucu      g  gu   ucuuuuuacgcaua 


Annotation confidence Not enough data
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Genome context
EQ974604.1: 1377-1492 [+]

Database links

Mature rco-miR164c

Accession MIMAT0014158
Description Ricinus communis rco-miR164c mature miRNA
Sequence 6 - UGGAGAAGCAGGGCACGUGCA - 26
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995