miRBase entry: rco-MIR166a

Stem-loop rco-MIR166a


Accession
MI0013386
Description
Ricinus communis rco-MIR166a precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
2 open access papers mention rco-MIR166a
(5 sentences)

Sequence

uaaggggaauguugucugguucaaggccuaccuauugaucuguuucaguuucauucaauauacugaaaaaucuguauaugggaaacuauccuguggucgauuugaucauuucuuaggaucuccUCGGACCAGGCUUCAUUCCCCuuaau
(((((((((((..(((((((((.(((((((.....(((((...((((((............))))))(((((.(..(((((((.....)))))))..))))))))))).....))))....))).)))))))))..)))))))))))..

Structure
--           uu         a   ----    ccuau     uguuucaguuucauucaauauacugaa     u ua       a 
  uaaggggaaug  gucugguuc agg    ccua     ugauc                           aaauc g  uauggga a
  |||||||||||  ||||||||| |||    ||||     |||||                           ||||| |  ||||||| c
  auuCCCCUUAC  CGGACCAGG Ucc    ggau     acuag                           uuuag c  guguccu u
ua           UU         C   ucua    ucuuu     ---------------------------     - ug       a 


Annotation confidence Not enough data
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Genome context
EQ973793.1: 790389-790537 [-]

Database links

Mature rco-miR166a

Accession MIMAT0014160
Description Ricinus communis rco-miR166a mature miRNA
Sequence 124 - UCGGACCAGGCUUCAUUCCCC - 144
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995