miRBase entry: rco-MIR172

Stem-loop rco-MIR172


Accession
MI0013405
Description
Ricinus communis rco-MIR172 precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
3 open access papers mention rco-MIR172
(11 sentences)

Sequence

cugauggagcaucaucaagauucacaaacuuuaucuagggcuaguggguuguuguggucccuuuucuuuuucuuuuuuucuuuuucucuugcuucaauccaauagucccuuugauaugGGAAUCUUGAUGAUGCUGCAGcggca
(((.((.((((((((((((((((.((.....((((.(((((((.(((((((..((((...............................))))..))))))).))).))))..)))))).)))))))))))))))).)).)))..

Structure
--   a  g                a  aacuu    -u    -   g       uu    ucccuuuucuuuuu 
  cug ug agcaucaucaagauuc ca     uauc  aggg cua uggguug  gugg              c
  ||| || |||||||||||||||| ||     ||||  |||| ||| |||||||  ||||              u
  ggc AC UCGUAGUAGUUCUAAG gu     auag  uccc gau accuaac  cguu              u
ac   G  G                G  -----    uu    u   a       uu    cucuuuuucuuuuu 


Annotation confidence Not enough data
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Genome context
EQ974292.1: 52781-52924 [+]

Database links

Mature rco-miR172

Accession MIMAT0014179
Description Ricinus communis rco-miR172 mature miRNA
Sequence 119 - GGAAUCUUGAUGAUGCUGCAG - 139
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995