miRBase entry: rco-MIR319a

Stem-loop rco-MIR319a


Accession
MI0013406
Description
Ricinus communis rco-MIR319a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
2 open access papers mention rco-MIR319a
(6 sentences)

Sequence

uuaagagagcuuucuucaguccacucauggguggcgguaggauuuaauuagcugccgacucauucauccaaauacugaguuaaaaaguucagaaaacaaaaggggcgggugcuguagaaaagaagguuuacccaguaaaugagugaaugaugcgggagacaaauugaaucuuaagcuuccuguacUUGGACUGAAGGGAGCUCCCUuuacu
..(((.(((((((((((((((((...(((((.(((..((((((((((((.(((.(((..((((((((.((..(((((.........(((.....)))......(((....)))(((((........))))).)))))..)).))))))))..))).)).).)))))))))))).))).)))))...))))))))))))))))).)))....

Structure
--uu   a                 cuc     u   gg            a -  g   ac        c  aa     aguuaaaaaguucagaaaacaaaaggggcgggugcu     aaa 
    aag gagcuuucuucagucca   auggg ggc  uaggauuuaauu g cu ccg  ucauucau ca  uacug                                    guaga   g
    ||| |||||||||||||||||   ||||| |||  |||||||||||| | || |||  |||||||| ||  |||||                                    |||||    
    uUC CUCGAGGGAAGUCAGGU   ugucc ucg  auucuaaguuaa c ga ggc  aguaagug gu  augac                                    cauuu   a
ucau   C                 Uca     u   -a            a a  g   gu        a  aa     -----------------------------------c     gga 


Annotation confidence Not enough data
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Genome context
EQ973774.1: 3280054-3280264 [-]

Database links

Mature rco-miR319a

Accession MIMAT0014180
Description Ricinus communis rco-miR319a mature miRNA
Sequence 186 - UUGGACUGAAGGGAGCUCCCU - 206
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995