miRBase entry: rco-MIR393

Stem-loop rco-MIR393


Accession
MI0013412
Description
Ricinus communis rco-MIR393 precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
2 open access papers mention rco-MIR393
(11 sentences)

Sequence

aaaguUCCAAAGGGAUCGCAUUGAUCuaaugucguuggguaccuaaaugaguuaauuauaaaucuauaauccaauucauuggaucaugcgaucccuuaggaagucucc
..(.((((.((((((((((((.(((((((((..(((((((............................))))))).))))))))))))))))))))).)))).)....

Structure
--aa g    A            U         uc       accuaaaugaguu 
    a uUCC AAGGGAUCGCAU GAUCuaaug  guugggu             a
    | |||| |||||||||||| |||||||||  |||||||              
    u aagg uucccuagcgua cuagguuac  uaaccua             a
ccuc g    a            -         -u       auaucuaaauauu 


Annotation confidence Not enough data
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Genome context
EQ973773.1: 26964-27071 [+]

Database links

Mature rco-miR393

Accession MIMAT0014186
Description Ricinus communis rco-miR393 mature miRNA
Sequence 6 - UCCAAAGGGAUCGCAUUGAUC - 26
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995