Stem-loop sequence rco-MIR395c

Accession

MI0013415 (change log)

Description

Ricinus communis miR395c stem-loop

Gene family

MIPF0000016; MIR395

Literature search

2 open access papers mention rco-MIR395c
(7 sentences)

Stem-loop

   -    -        ug         c     -u   aaaag 
5'  cuag aguucccu  agcacuuca uggga  gaa     g
    |||| ||||||||  ||||||||| |||||  |||     u
3'  gguc ucaagggg  uugugaagu auccu  cuu     c
   u    c        gu         c     uc   cugac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_RCG_1.1; JCVI_RCG_1.1): EQ973849.1: 142167-142248 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rco-MIR395c

• rco-MIR395a: EQ973849.1: 133932-134005 [-]
• rco-MIR395d: EQ973849.1: 136644-136730 [-]
• rco-MIR395c: EQ973849.1: 142167-142248 [+]
• rco-MIR395b: EQ973849.1: 150771-150867 [+]

Database links

• miRBase Tracker:MI0013415

Mature sequence rco-miR395c

• Accession: MIMAT0014189
• Sequence: 57 - cugaaguguuugggggaacuc - 77
• Evidence: experimental; RT-PCR [1]

References

1. PMID:19942686 "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants" Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M Nucleic Acids Res. 38:981-995(2010).