Stem-loop rco-MIR399b

Accession

MI0013423

Description

Ricinus communis rco-MIR399b precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

2 open access papers mention rco-MIR399b
(7 sentences)

Sequence

uuacagggcaaaaucuccauuggcauggaaccacuaagauauccaaaccaaucaagccaggauuucaauagugugugcccUGCCAAAGGAGAUUUGCCCGGcaaua
.....(((((((.(((((.((((((.((.(((((((.((.((((...............)))).))..))))).)).)).)))))).)))))))))))).......

Structure

--uuaca       a     a      u  a  -     -a  u    aaacca 
       gggcaaa ucucc uuggca gg ac cacua  ga aucc      a
       ||||||| ||||| |||||| || || |||||  || ||||      u
       CCCGUUU AGAGG AACCGU cc ug gugau  cu uagg      c
auaacGG       -     A      c  g  u     aa  u    accgaa 

Annotation confidence Not enough data

Genome context

EQ973891.1: 142031-142136 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rco-MIR399b

Mature rco-miR399b

• Accession: MIMAT0014197
• Description: Ricinus communis rco-miR399b mature miRNA
• Sequence: 81 - UGCCAAAGGAGAUUUGCCCGG - 101
• Evidence: experimental ; RT-PCR [1]

References

1. PubMed ID: 19942686
   Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
   "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
   "Nucleic Acids Res (2010) 38:981-995