miRBase entry: rco-MIR399d

Stem-loop rco-MIR399d


Accession
MI0013425
Description
Ricinus communis rco-MIR399d precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
2 open access papers mention rco-MIR399d
(7 sentences)

Sequence

ucguagggcaucucucgcuuggcaggcaaugauaugaagugaagcuaaauuuuagcauuaguuugaucccaauggcuUGCCAAAGGAGAGCUGCCCUGugacu
((((((((((.(((((..(((((((((...(((..(((.(((.(((((...))))).))).))).)))......)))))))))..))))).))))))))))..

Structure
--          u     gc         ---aau   au   g   a     a 
  ucguagggca cucuc  uuggcaggc      gau  gaa uga gcuaa  
  |||||||||| |||||  |||||||||      |||  ||| ||| ||||| u
  aguGUCCCGU GAGAG  AACCGUucg      cua  uuu auu cgauu  
uc          C     GA         guaacc   -g   g   a     u 


Annotation confidence Not enough data
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Genome context
EQ973773.1: 461879-461981 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rco-MIR399d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rco-miR399d

Accession MIMAT0014199
Description Ricinus communis rco-miR399d mature miRNA
Sequence 78 - UGCCAAAGGAGAGCUGCCCUG - 98
Evidence experimental
RT-PCR [1]

References

  1. PubMed ID: 19942686
    Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
    "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
    "Nucleic Acids Res (2010) 38:981-995