miRBase entry: aae-mir-184

Stem-loop aae-mir-184


Accession
MI0013433
Description
Aedes aegypti aae-mir-184 precursor miRNA
Gene family
MIPF0000059; mir-184

Literature search
4 open access papers mention aae-mir-184
(10 sentences)

Sequence

1669912 reads, 86688 reads per million, 2 experiments
ccgguguauucguacccuuaucauucuugcgccccguguuauauuguuggcgacUGGACGGAGAACUGAUAAGGGCccgggucaccuu
..((((.(((((..((((((((((((((.((.((.((((((......)))).)).)).))))))).)))))))))..)))))))))..

Structure
cc    u     ua         -     g  c  c  -    ua 
  ggug auucg  cccuuauca uucuu cg cc gu guua  u
  |||| |||||  ||||||||| ||||| || || || ||||   
  ccac ugggc  GGGAAUAGU AAGAG GC GG ca cggu  u
uu    -     cC         C     -  A  U  g    ug 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.496: 143366-143453 [-]

Database links

Mature aae-miR-184

Accession MIMAT0014207
Description Aedes aegypti aae-miR-184 mature miRNA
Sequence 55 - UGGACGGAGAACUGAUAAGGGC - 76
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119