miRBase entry: aae-mir-87

Stem-loop aae-mir-87


Accession
MI0013461
Description
Aedes aegypti aae-mir-87 precursor miRNA
Gene family
MIPF0000152; mir-87


Sequence

2613 reads, 137 reads per million, 2 experiments
accagauugucacuggccagccugaaauuugcuaaaccuguguguauuugauucaaacaaucaagGUGAGCAAAUUUUCAGGUGUGUcggagaacaaucgcaaucau
....(((((((.(((((..((((((((((((((..(((((..(((...........)))..).)))).)))))).))))))))..))))).).))))))........

Structure
----acca      - a     ca        -      aa    - ug   auuu 
        gauugu c cuggc  gccugaaa uuugcu  accu g  ugu    g
        |||||| | |||||  |||||||| ||||||  |||| |  |||    a
        cuaaca g ggcUG  UGGACUUU AAACGA  UGga c  aca    u
uacuaacg      a a     UG        U      -G    a ua   aacu 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.360: 1010781-1010887 [+]

Database links

Mature aae-miR-87

Accession MIMAT0014252
Description Aedes aegypti aae-miR-87 mature miRNA
Sequence 66 - GUGAGCAAAUUUUCAGGUGUGU - 87
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119