miRBase entry: aae-mir-315

Stem-loop aae-mir-315


Accession
MI0013467
Description
Aedes aegypti aae-mir-315 precursor miRNA
Gene family
MIPF0000141; mir-315

Literature search
1 open access papers mention aae-mir-315
(1 sentences)

Sequence

21891 reads, 1105 reads per million, 2 experiments
aguguuucuauaaaaUUUUGAUUGUUGCUCAGAAAGCcgugcauuugaaacgggucgCUUUCGAGCAGUAAUCAAAGUCaaauaaaacacca
.((((((.(((...((((((((((((((((.(((((((((.........)))....))))))))))))))))))))))...)))))))))..

Structure
-a      c   aaa                A      ----   gca 
  guguuu uau   aUUUUGAUUGUUGCUC GAAAGC    cgu   u
  |||||| |||   |||||||||||||||| ||||||    |||   u
  cacaaa aua   UGAAACUAAUGACGAG CUUUCg    gca   u
ac      -   aaC                -      cugg   aag 


Annotation confidence High
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.612: 104128-104219 [+]

Database links

Mature aae-miR-315-5p

Accession MIMAT0014262
Description Aedes aegypti aae-miR-315-5p mature miRNA
Sequence 16 - UUUUGAUUGUUGCUCAGAAAGC - 37
Evidence experimental
454 [1], Illumina [2]

Mature aae-miR-315-3p

Accession MIMAT0015370
Description Aedes aegypti aae-miR-315-3p mature miRNA
Sequence 58 - CUUUCGAGCAGUAAUCAAAGUC - 79
Evidence experimental
454 [1]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119