miRBase entry: aae-mir-7

Stem-loop aae-mir-7


Accession
MI0013496
Description
Aedes aegypti aae-mir-7 precursor miRNA
Gene family
MIPF0000022; mir-7

Literature search
1 open access papers mention aae-mir-7
(1 sentences)

Sequence

63619 reads, 3173 reads per million, 2 experiments
ucgcaauauuuuguaUGGAAGACUAGUGAUUUUGUUGUuuugcuuacgauaauaacaauaaaucucaagucuuucuacaaaguuugcug
..((((.((((((((.((((((((.(.(((((((((((((((....))).)))))))..))))).).))))))))))))))))))))..

Structure
uc    u        U        A U     --       -   c 
  gcaa auuuugua GGAAGACU G GAUUU  UGUUGUu uug u
  |||| |||||||| |||||||| | |||||  ||||||| |||  
  cguu ugaaacau cuuucuga c cuaaa  acaauaa agc u
gu    -        -        a u     ua       u   a 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.1359: 46026-46114 [+]

Database links

Mature aae-miR-7

Accession MIMAT0014290
Description Aedes aegypti aae-miR-7 mature miRNA
Sequence 16 - UGGAAGACUAGUGAUUUUGUUGU - 38
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119