miRBase entry: aae-mir-970

Stem-loop aae-mir-970


Accession
MI0013498
Description
Aedes aegypti aae-mir-970 precursor miRNA
Gene family
MIPF0000700; mir-970

Literature search
1 open access papers mention aae-mir-970
(1 sentences)

Sequence

157245 reads, 7915 reads per million, 2 experiments
aacgguauugcggcuuucauagguagcuugcguuugucuuagcugguauugaaugugauagguaUCAUAAGACACACGCGGCUAUuuuugagaguaucaagcaucuug
...(((.(((..(((((((.((((((((.((((.(((((((..(((((((..........)))))))))))))).)))))))))))).)))))))..)))..)))...

Structure
aac   -a   cg       u        u    u       gc       gaau 
   ggu  uug  gcuuuca agguagcu gcgu ugucuua  ugguauu    g
   |||  |||  ||||||| |||||||| |||| |||||||  |||||||     
   cua  aac  ugagagu uuUAUCGG CGCA ACAGAAU  ACUaugg    u
guu   cg   ua       u        -    C       --       auag 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.229: 1045811-1045918 [+]

Database links

Mature aae-miR-970

Accession MIMAT0014292
Description Aedes aegypti aae-miR-970 mature miRNA
Sequence 65 - UCAUAAGACACACGCGGCUAU - 85
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119